AMBER Archive (2005)

Subject: Re: Re: AMBER: Fail to load the trajectory file.

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Mon Apr 11 2005 - 20:11:19 CDT


> >> Could not open file (hd5_wat.md.crd) with mode (r)
> >
> >Sounds like the file does not exist or has wrong permissions.
> >
> I checked it. The file exist, and not problem for the permission.
> I can read it by 'more'.

Is it in the directory where you are running? Is the trajin file
in the same directory?

Ideally the program would tell you what the problem is
(file not found, bad permissions, bad format, size, whatever).

You could try something like

% mv hd5_wat.md.crd hd5_wat.md.crd.bak
% head -5000 hd5_wat.md.crd.bak > hd5_wat.md.crd

and see if the error message changes.

Bill
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