AMBER Archive (2005)

Subject: AMBER: question about amber parameter file format etc.

From: jz7_at_duke.edu
Date: Wed Mar 16 2005 - 11:37:29 CST


Dear all,

Is there any documentation on the format of amber parameter file (.dat
file)? Right now I feel confused about the torsion part. What does the
first numeric column (after the torsion angle definition) represent? Also
is the potention column actually V or V/2?

Also, what is the difference between Amber and Amber* in Macromodel?

Thanks a lot!

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