AMBER Archive (2003)

Subject: Re: AMBER: Curves parameters UU and PP

From: Surjit Dixit (sdixit_at_wesleyan.edu)
Date: Sat Dec 20 2003 - 09:45:28 CST


Those values refer to the curvature in DNA. UU stands for the angle
between the terminal base pairs, and PP for the angle between the
penultimate base pairs (this is to verify possible end effects)
Surjit

Peter Gannett wrote:
> All:
>
> I am using Curves to analyze a DNA structure. There are to parameters
> that I do not understand. These are UU and PP. Can anyone explain to
> me what these parameters are or point me to a reference that describes
> how they are derived, etc. Thanks.
>
> Pete Gannett
>
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