AMBER Archive (2003)

Subject: AMBER: problem with pdb files

From: Mithun Mitra (mitra_at_chemsun.chem.umn.edu)
Date: Sun Oct 12 2003 - 15:12:45 CDT


Hi,
   I am a new user of amber program. I made a protein-rna complex
structure using FTDOCK which gave me the pdb file of the complex as the
output. I loaded the pdb file in the leap module of amber. After that I
gave the command for creating parameter files and coordinate files . I
gave me error and files were not created.
  Is there any problem with directly inputting the pdb files?
  Is there any quick way of editing the pdb files ?
Thanks,
Mithun

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu