AMBER Archive (2003)

Subject: AMBER: improper

From: Li Ying (bj_0206_at_yahoo.com)
Date: Tue Sep 30 2003 - 15:08:11 CDT

Dear Amber users,
 
When making a prep file for Leap, which atoms should be considered in improper term? Should all sp2 atoms be defined in improper. I checked all_nuc94.in file in amber7, found that C4 and C5 of DG and DA are not in improper terms.
 
Thanks for your help.
Ying

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