AMBER Archive (2003)

Subject: Re: AMBER: DNA helix is not in z-direction

From: David A. Case (case_at_scripps.edu)
Date: Fri Sep 05 2003 - 19:37:20 CDT

On Fri, Sep 05, 2003, A. Hungie wrote:
>
> Could any one
> suggest me how to run simulation that the main axis of DNA still is in
> z-directin?

I don't think there is any way to do that that doesn't involve modifying the
code. After all, molecules *do* rotate in solution. Allowing that to happen
is one of the advantages of going to the more-spherical truncated ocathedron.

...best regards......dac 

-- 

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David A. Case                     |  e-mail:      case_at_scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
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