AMBER Archive (2003)

Subject: Re: AMBER: complete pdb structure

From: David A. Case (case_at_scripps.edu)
Date: Thu Aug 14 2003 - 00:30:08 CDT

On Thu, Aug 14, 2003, Mi-Kyung Seo wrote:
>
> I got pdb file from Brookhaven protein database and tried to add missing
> atoms. (backbone atoms and side chains)
> Is there any way to complete pdb file retrieved from PDB databank with
> AMBER 7.0?

This is not something that Amber does. You need to search for homology
modeling and loop/side-chain prediction algorithms. A variety of these
are available, many as web services.

..regards...dac 

-- 

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David A. Case                     |  e-mail:      case_at_scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
La Jolla CA 92037  USA            |    http://www.scripps.edu/case
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