AMBER Archive (2003)

Subject: Re: AMBER: charge method of antechamber

From: David A. Case (case_at_scripps.edu)
Date: Tue Aug 05 2003 - 00:24:00 CDT


On Mon, Aug 04, 2003, Helios Chen wrote:
>
> I have succesfully compiled for file conversions, i.e.
> antechamber -i $AMBERHOME/test/antechamber/tp/tp.pd -fi pdb -o tp.prepin -fo
> prepi.
>
> But there is some wrong message as follows "Unable to find mopac charges in
> ANTECHAMBER_MUL.OUT" when I applied the "-c bcc" charged method to add
> charges. However it can work by using other charged method "-c gas", can
> anyone help me on this? Thanks in advance.

Look at the ANTECHAMBER_MUL.OUT file to see if you can see what went wrong;
(this is the output from the mopac run). If you don't have such a file,
make sure you have a working mopac -- see item (4) on p. 8 of the Users'
Manual.

..hope this helps...dac

-- 

================================================================== David A. Case | e-mail: case_at_scripps.edu Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | http://www.scripps.edu/case ================================================================== ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to amber_at_scripps.edu To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu