AMBER Archive (2003)

Subject: Re: AMBER: AMBER7 & mpich : (no-attachment version)

From: David A. Case (case_at_scripps.edu)
Date: Sat Aug 02 2003 - 15:30:00 CDT


On Sat, Aug 02, 2003, takanori.kanazawa_at_pharma.novartis.com wrote:
>
> I have a problem running parallel sander jobs on a linux cluster.

> clddc 44> ./Run.dhfr7_MPI
> Unit 5 Error on OPEN: gbin

Have you tracked down the above error: are you *sure* there is a file with
the proper permissions called "gbin"? Although it is good to be running
a test case, from the file name above (Run.dhfr7_MPI), this looks like
a modified version of the standard test case -- why not try the actual
test case exactly as provided? That would at least eliminate some sources
of problems.

..good luck...dac

-- 

================================================================== David A. Case | e-mail: case_at_scripps.edu Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | http://www.scripps.edu/case ================================================================== ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to amber_at_scripps.edu To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu