AMBER Archive (2003)

Subject: AMBER: AMBER and NAMD

From: Vlad Cojocaru (Vlad.Cojocaru_at_mpi-bpc.mpg.de)
Date: Sun Jul 27 2003 - 08:57:24 CDT

Dear Amber users,
   Has anyone try to run NAMD with AMBER input? If yes can somebody tell
me what would be the equivalent of "ntt=1, tautp=2.0" in NAMD?? Is tautp
constant the coefficien that they are talking about in the tCoupleFile
(namd user guide)?.
   Could namd do the same simulated annealing protocol as described at
page 135 in amber manual?
   Thanks a lot for any replies,
Best regards,
vlad 

-- 
Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1327 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
home tel: ++49-551-9963204  

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