AMBER Archive (2003)

Subject: Re: AMBER: Non-standard Residue

From: David A. Case (case_at_scripps.edu)
Date: Tue Jul 22 2003 - 16:06:50 CDT


On Tue, Jul 22, 2003, Ran Ye wrote:

> cobre07 9% antechamber -fi pdb -fo gzmat -i
> 1CAG-am.pdb -o 1CAG-am.gau
>
> Unrecognized atomic name , exitBus error (core dumped)

We need to see what is in the 1CAG-am.pdb file. Antechamber is not all that
robust in handling bad input, but somehow it thinks you have a blank atom
name....you could look at your pdb file to see if anything is funny; otherwise
you will have to post it.

..regards...dac

-- 

================================================================== David A. Case | e-mail: case_at_scripps.edu Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | http://www.scripps.edu/case ================================================================== ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to amber_at_scripps.edu To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu