AMBER Archive (2003)

Subject: clustering trajectories

From: chernhoe (chernhoe_at_imcb.nus.edu.sg)
Date: Wed May 28 2003 - 22:19:41 CDT

Hi all,
        does anyone have any idea which program(s) or script(s) in Amber7
should I use to cluster the molecular dynamics trajectories? I suppose
rdparm is one of them, but when I typed in the command 'rms' in rdparm,
it gave me the following:

RDPARM MENU: rms
 
ERROR in dispatchToken: Token string "rms" not found in tokenlist

Specifically, does anyone know which program was used in the paper J. Am
Chem. Soc. Vol 123, No 6, 2001, pp 1040-1046 to make the cluster
families? Thanks!

Tommy Wang

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