AMBER Archive (2003)

Subject: Re: off-diagonal VDW term

From: David A. Case (case_at_scripps.edu)
Date: Tue May 20 2003 - 09:43:33 CDT


On Mon, May 19, 2003, Jiyoung Heo wrote:

> I want to optimize the off-diagonal interaction for two specific atom
> types.

You can edit the prmtop file and put in what ever off-diagonal Lennard-Jones
parameters you want. But there is no way inside the program to specify
an unusual combination rule.

..good luck...dac

-- 

================================================================== David A. Case | e-mail: case_at_scripps.edu Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | http://www.scripps.edu/case ==================================================================