AMBER Archive (2003)

Subject: Re: question about H-bond in carnal?

From: Sanjeev B.S. (sanjeev_at_mbu.iisc.ernet.in)
Date: Tue Apr 29 2003 - 01:59:15 CDT

Are they round-off errors? I did not face any problems with carnal. Easy
way to cehck if there really is a problem is to run carnal on one PDB and
verify. The H-bond list will give for all PDBs successively and one might
get easily confused...

On 27 Apr 2003, Lishan Yao wrote:

Hi:
   It works. But the problem is the distances between heavy atoms I get
are wrong. I used insightII and moil-view to check them.I got different
results.