AMBER Archive (2003)

Subject: Protein Reorientation

From: Gemma Kinsella (maynooth_at_maths.tcd.ie)
Date: Mon Mar 03 2003 - 07:54:48 CST

Hi all,

I've come across what should be a trivial problem while trying to set up a
membranne protein simulation in a bilayer. I wish to reorientate the
position of my starting protein so it will lie straighter in the bilayer
during set-up. (i.e. loops at top and bottom)

While I have no problem doing so visually, (weblab viewer, vmd, sybyl) I have
been unable to find a piece of software that will allow me to save the
proteins new coordinates to be introduced to leap and was hoping someone
could point me in the right direction.

Many thanks,

Gemma