AMBER Archive (2003)

Subject: How to put the outside atoms back to the truncated octahedron box?

From: Ling Zhang (lz267_at_nyu.edu)
Date: Wed Feb 12 2003 - 13:49:12 CST

Dear All:

I used truncated octahedron box for simulation using Amber 6. And some of the atoms drifted out of the period box. The image option of Amber 6 is not working. And Amber 5 can't recognize the truncated octahedron box shape. Is there a way that I can put the outside atoms back in the box? Thanks a lot.

Best,
Ling Zhang