AMBER Archive (2003)

Subject: references

From: Ioana Cozmuta (ioana_at_nas.nasa.gov)
Date: Mon Feb 10 2003 - 20:22:51 CST

Hi,

Could anyone please point me out to some good papers that discuss the
following two issues (or related):
1. what is the best approach to simulate ionic solutions (for example, if
in experiments the solution is 1M KCl what is the most accurate way to
treat this in simulations: cutoff, etc, any details that one should be
aware of)
2. simulations of single stranded DNA or RNA polymers (what are some
tipical conformations, how do they depend on the pH of the solution etc).

Thank you very much in advance,
Ioana

*********************************
* Ioana Cozmuta, PhD *
* NASA-AMES Research Center *
* Mail Stop 230-3 *
* Moffet Field,CA 94035 *
* phone: (650) 604-0993 *
* fax: (650) 604-0350 *
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