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AMBER Archive (2003)Subject: Periodic Box
From: John Finke (jfinke_at_chem.ucsd.edu)
Hello,
I have an AMBER problem which I am having some difficulty,
I am using sander_classic to run MD on 2 separate peptide fragments and
I have followed the tutorial examples as much as possilble to create a
0.90000000E+02 0.34297554E+02 0.33792557E+02 0.34400002E+02
I don't know what the first number is but the next three are the x, y, z
In any event, it appears that sander is ignoring the box as the 2 peptides
If anyone has had experience using periodic boxes with sander_classic, I
Thanks.
Sincerely,
John Finke
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