AMBER Archive (2002)

Subject: Re: water box size

From: Shixiang Yan (sy8_at_SCIRES.ACF.NYU.EDU)
Date: Fri Jul 19 2002 - 18:02:32 CDT


you can use a program called Simulaid developed by Dr. Mezei... the
program is very easy to use... the website is below:

http://fulcrum.physbio.mssm.edu/~mezei/simulaid/

good luck.. yan

On Fri, 19 Jul 2002, eric hu wrote:

> hi, if I want to solvate my entire system, how can I
> figure out the best water box which is big enough to
> cover all the solute atoms but does not contain too
> many extra water molecules? Thanks!
>
> Eric
>
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