AMBER Archive (2001)

Subject: Fluorescent dyes

From: Troy Bothwell (tbothwe1_at_bigred.unl.edu)
Date: Wed Feb 28 2001 - 22:01:47 CST

Hello all,

I am attempting to simulate fluorescein attached to DNA by a linker in AMBER
6.0 and was wondering if anyone has experience with large organic molecules
in AMBER. I am using xleap to build fluorescein onto a DNA oligo, but I
believe there will be missing parameters that I may need to track down. Any
input is welcome.

Thanks,

Troy Bothwell