AMBER Archive (2000)

Subject: DNA flexibility

From: Jithesh P.V (jithesh_at_cdac.ernet.in)
Date: Mon Dec 11 2000 - 22:33:08 CST

Hi,

We are doing MD studies of DNA with water and ions using AMBER to study
the flexibility. Could anyone suggest the best method of analysis of MD
trajectories to represent the flexibility of duplex DNA.

Thanks
Jithesh

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Jithesh P.V.
Bioinformatics Applications
National PARAM Supercomputing Facility
Centre for Development of Advanced Computing
Pune University Campus, Pune, India - 411007.
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