AMBER Archive (2000)

Subject: Re: minimization of many structures

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Tue Dec 05 2000 - 10:47:16 CST

Do you want them to interact? If not, you need to
minimize separately, i.e. put in different files.
If interacting as one system, make sure there is a
TER card after each molecule & load the whole pdb
file.

Bill Ross

        I'd like to know if it's possible to run minimization on more than one
        structure:
        what should I do if I've ten structures in a single pdb file and
        how can I specify them to be treated as single structure but minimized
        simultaneosly.