AMBER Archive (2000)

Subject: perturbing charge

From: Marcela Madrid (mmadrid_at_psc.edu)
Date: Fri Sep 29 2000 - 18:02:41 CDT


Hi,

I have a DNA molecule with several Adenine. I would like
to perturb the charge in one of them. I am using xleap to first select
that particular Adenine and then perturb the charge. If I do it this way,
will the charges on the other Adenine also get perturbed? Do I have to
define a different residue first?

thanks, Marcela