AMBER Archive (2000)

Subject: partial solvation

From: EOIN GALLIGAN (paxeg_at_pan1.pharm.nottingham.ac.uk)
Date: Thu Sep 07 2000 - 09:53:10 CDT

Dear all,

I am trying to partially solvate a ligand within a
protein binding pocket using the solvatecap
command. However, on looking at the tutorial
where this is done with streptavidin and biotin, I
am not sure on how the median coordinates for
biotin are found. All help gratefully received.

With Regards, Eoin Galligan

Graduate Research Student
Laboratory of Biophysics and Surface Analysis
Institute of Pharmaceutical Sciences
University of Nottingham
Nottingham
TEL: 00 44 (0)115 9515151 x66272
MOB: 00 44 (0)7968 349629
MOB MAIL:eoingalligan_at_sms.genie.co.uk

Laboratory of Biophysics and Surface Analysis,
Institute of Pharmaceutical Sciences,
University of Nottingham,
Nottingham
UK