AMBER Archive (2000)

Subject: bond order

From: EOIN GALLIGAN (paxeg_at_pan1.pharm.nottingham.ac.uk)
Date: Tue Jun 13 2000 - 10:44:09 CDT

Dear All

        I'm trying parameterise a pdb file and set
some bonds to double bonds using the bond
command ie bond atom1 atom2 [ order ] .

However I'm stuck on what to enter for atom1 or
atom2. I tried to use createAtom to make two
variables, but after using the bond command i
get an "illegal bond order message". Any help
appreciated.

With Regards, Eoin

<nofill>
tel: 0115 9515151 x66272
mob: 07968 349629
mob email:eoingalligan_at_sms.genie.co.uk

Laboratory of Biophysics and Surface Analysis,
Institute of Pharmaceutical Sciences,
University of Nottingham,
Nottingham
UK