AMBER Archive (2000)

Subject: parallel sander

From: Frank Yan (siebenamber_at_hotmail.com)
Date: Fri Feb 18 2000 - 16:42:26 CST


i'm running sander on a shared memory sgi 6.5 machine. for instance i use 2
cpus, but sometime sander cannot use both of them, only one is 99% used and
another is not used at all when using top to look at. for like 4 cpus,
sometime it shows like each is 25% used (at that time the machine is not
loaded heavily). is there any way to solve the imbalance problem between the
cpus? thanks a lot... frank

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